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Authors and Citation

Authors

  • Iñaki Sasiain Casado. Coauthor. Maintainer.

    • Deborah F. Nacer de Oliveira. Coauthor.

    Mattias Aine.

    Srinivas Veerla.

    Johan Staaf.



Citation

Cite the following article if the reference_regression_generator(), PurEst() or reference_based_beta_correction() functions have been used.

Sasiain I, Nacer DF, Aine M, Veerla S, Staaf J (2024). “Tumour purity estimated from bulk DNA methylation can be used for adjusting beta values of individual samples to better reflect tumor biology.” Nucleic Acid Research Genomic and Bioinformatics, 6(4) doi:10.1093/nargab/lqae146. 

@Article{,
  title = {Tumour purity estimated from bulk DNA methylation can be used for adjusting beta values of individual samples to better reflect tumor biology},
  author = {Iñaki Sasiain and Deborah F. Nacer and Mattias Aine and Srinivas Veerla and Johan Staaf},
  journal = {Nucleic Acid Research Genomic and Bioinformatics},
  year = {2024},
  volume = {6},
  number = {4},
  pages = {12},
  doi = {https://doi.org/10.1093/nargab/lqae146},
}


Cite the following article if the beta_correction_for_cohorts() function has been used.

Staaf J, Aine M (2022). “Tumor purity adjusted beta values improve biological interpretability of high-dimensional DNA methylation data.” Plos One, 17(9), 20. doi:10.1371/journal.pone.0265557. 

@Article{,
  title = {Tumor purity adjusted beta values improve biological interpretability of high-dimensional DNA methylation data},
  author = {Johan Staaf and Mattias Aine},
  journal = {Plos One},
  year = {2022},
  volume = {17},
  number = {9},
  pages = {20},
  doi = {https://doi.org/10.1371/journal.pone.0265557},
}